An edition of Bacterial pangenomics
(2015)
Bacterial pangenomics
methods and protocols
by Alessio Mengoni, Marco Galardini, and Marco Fondi
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Bacterial Pangenomics: Methods and Protocols
2016, Springer New York
in English
1493955470 9781493955473
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Book Details
Table of Contents
Pulsed field gel electrophoresis and genome size estimates -- Rosa Alduina and Annalisa Pisciotta
Comparative analyses of extrachromosomal bacterial replicons, identification of chromids, and experimental evaluation of their indispensability -- Lukasz Dziewit and Dariusz Bartosik
Choice of next-generation sequencing pipelines -- F. Del Chierico [and others]
Pyrosequencing protocol for bacterial genomes -- Ermanno Rizzi
Bacterial metabarcoding by 16S rRNA gene ion torrent amplicon sequencing -- Elio Fantini [and others]
Illumina-solexa sequencing protocol for bacterial genomes -- Zhenfei Hu, Lei Cheng, and Hai Wang
High-throughput phenomics -- Carlo Viti [and others]
Comparative analysis of gene expression : uncovering expression conservation and divergence between Salmonella enterica serovar typhimurium strains LT2 and 14028S -- Paolo Sonego [and others]
Raw sequence data and quality control -- Giovanni Bacci
Methods for assembling reads and producing contigs -- Valerio Orlandini, Marco Fondi, and Renato Fani
Mapping contigs using CONTIGuator -- Marco Galardini, Alessio Mengoni, and Marco Bazzicalupo
Gene calling and bacterial genome annotation with BG7 -- Raquel Tobes [and others]
Defining orthologs and pangenome size metrics -- Emanuele Bosi, Renato Fani, and Marco Fondi
Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES : a case study of pIncA/C plasmids -- Pablo Vinuesa and Bruno Contreras-Moreira
Genome-scale metabolic network reconstruction -- Marco Fondi and Pietro Liò
From pangenome to panphenome and back -- Marco Galardini, Alessio Mengoni, and Stefano Mocali
Genome-wide detection of selection and other evolutionary forces -- Zhuofei Xu and Rui Zhou
Integrated microbial genome resource of analysis -- Alice Checcucci and Alessio Mengoni.
Edition Notes
Includes bibliographical references and index.
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| September 21, 2020 | Created by MARC Bot | import new book |