Multiple sequence alignment methods

Multiple sequence alignment methods
David James Russell, David Jam ...
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Last edited by MARC Bot
October 6, 2024 | History

Multiple sequence alignment methods

"From basic performing of sequence alignment through a proficiency at understanding how most industry-standard alignment algorithms achieve their results, Multiple Sequence Alignment Methods describes numerous algorithms and their nuances in chapters written by the experts who developed these algorithms. The various multiple sequence alignment algorithms presented in this handbook give a flavor of the broad range of choices available for multiple sequence alignment generation, and their diversity is a clear reflection of the complexity of the multiple sequence alignment problem and the amount of information that can be obtained from multiple sequence alignments. Each of these chapters not only describes the algorithm it covers but also presents instructions and tips on using their implementation, as is fitting with its inclusion in the highly successful Methods in Molecular Biology series. Authoritative and practical, Multiple Sequence Alignment Methods provides a readily available resource which will allow practitioners to experiment with different algorithms and find the particular algorithm that is of most use in their application."--Publisher's description.

Publish Date
Publisher
Humana Press, Springer
Language
English
Pages
287

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Edition Availability
Cover of: Multiple sequence alignment methods
Multiple sequence alignment methods
2014, Humana Press, Springer
in English

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Book Details


Table of Contents

Dynamic programming -- O. Ufuk Nalbantoglu
Heuristic alignment methods -- Osamu Gotoh
Objective functions -- Haluk Dogan and Hasan H. Otu
Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment -- Stefano Iantorno ... [et al.]
BLAST and FASTA similarity searching for multiple sequence alignment -- William R. Pearson
Clustal omega, accurate alignment of very large numbers of sequences -- Fabian Sievers and Desmond G. Higgins
T-coffee : tree-based consistency objective function for alignment evaluation -- Cedrik Magi ... [et al.]
MAFFT : iterative refinement and additional methods -- Kazutaka Katoh and Daron M. Standley
Multiple sequence alignment using probcons and probalign -- Usman Roshan
Phylogeny-aware alignment with PRANK -- Ari Loytynoja
GramAlign : fast alignment driven by grammar-based phylogeny -- David J. Russell
Multiple sequence alignment with DIALIGN -- Burkhard Morgenstern
PicXAA : a probabilistic scheme for finding the maximum expected accuracy alignment of multiple biological sequences -- Sayed Mohammad Ebrahim Sahraeian and Byung-Jun Yoon
Multiple protein sequence alignment with MSAProbs -- Yongchao Liu and Bertil Schmidt
Large-scale multiple sequence alignment and tree estimation using SATe -- Kevin Liu and Tandy Warnow
PRALINE : a versatile multiple sequence alignment toolkit -- Punto Bawono and Jaap Heringa
PROMALS3D : multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information -- Jimin Pei and Nick V. Grishin
MSACompro : improving multiple protein sequence alignment by predicted structural features -- Xin Deng and Jianlin Cheng.

Edition Notes

Includes bibliographical references and index.

Published in
New York
Series
Methods in Molecular Biology -- 1079, Springer protocols, Methods in molecular biology (Clifton, N.J.) -- v. 1079., Springer protocols (Series)

Classifications

Library of Congress
QH324.2 .M856 2014, QH324.2-324.25, QH441.2 .M856 2014

The Physical Object

Pagination
xii, 287 p.
Number of pages
287

ID Numbers

Open Library
OL31014302M
ISBN 10
1627036458
ISBN 13
9781627036450, 9781627036467
LCCN
2013947475
OCLC/WorldCat
847126040, 864024440

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Download catalog record: RDF / JSON
October 6, 2024 Edited by MARC Bot import existing book
February 26, 2022 Edited by ImportBot import existing book
November 12, 2020 Created by MARC Bot import new book